#Spatialtranscriptomics — Search

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Genes & Diseases Journal @GenesNDiseases · 5h

Single-cell and #SpatialTranscriptomics of primary testicular #DLBCL reveal an exhausted CD8⁺ T cell–dominated microenvironment & spatial immune architecture, with E2F & CREB inhibition suppressing #lymphoma proliferation & #tumor growth. @ZJUISM_Chin@a Read: http doi.org/10.1016/j.gend…

CD Genomics @CDGenomics2005 · 1d

Preserve spatial context in your RNA-seq data. 🧬 CD Genomics' 10x Visium services map whole transcriptomes onto intact FFPE & fresh frozen tissues. Turnkey bioinformatics included. Explore the workflow:cd-genomics.com/10x-spatial-tr…F #SpatialTranscriptomicsH

Inside Precision Medicine @Inside_PM · 2d

Prostate Cancer Cell Atlas Reveals Shortcomings of Current Diagnostics A cellular atlas of #prostatecancer has identified early molecular changes that are invisible to current pathology-based diagnostics @GarvanInstitute #pathology #spatialtranscriptomics hubs.li/Q048t8550

Prostate Cancer Cell Atlas Reveals Shortcomings of Current Diagnostics

A cellular atlas of prostate cancer has identified early molecular changes that are invisible to current pathology-based diagnostics.

From insideprecisionmedicine.com

Inside Precision Medicine @Inside_PM · 3d

Spatial Atlas Reveals Multicellular Networks Underpinning Healthy Human Skin Comprehensive spatial atlas of human #skin identifies multicellular neighborhoods that coordinate immune & structural functions @MountSinaiNYC #multiomics #spatialtranscriptomics hubs.li/Q0487vsR0

Spatial Atlas Reveals Multicellular Networks Underpinning Healthy Human Skin

A comprehensive spatial atlas of human skin identifies multicellular neighborhoods that coordinate immune and structural functions.

From insideprecisionmedicine.com

Hao Yin @HaoYin20 · 6d

#SpatialTranscriptomics #CellSegmentation FastReseg github.com/Nanostring-Bio… Using transcript scoring +"spatial doublet" test to rectify segmentation errors🥸 vs transcript-dominant approaches: Baysor Proseg @brukerspatial@SciReports 2025nature.com/articles/s4159…g6

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Gregory Lab @TheGregoryLab · Mar 19

Replying to @TheGregoryLab

#SingleCell #SpatialTranscriptomics #Alzheimers #AD

STO Consortium @sto_consortium · Mar 19

Prof. Mark Fiers (VIB / KU Leuven) will share insights on: “Spatial transcriptomics and the neuroinflammatory inflection point in Alzheimer’s disease” 📅 June 29–30, 2026 📍 Milan stocgeneralmeeting.comlTF #STOC #SpatialTranscriptomics #Neuroscience #AlzheimersResearch #Omi2zd

Stefan Canzar @StefanCanzar · Mar 17

Replying to @StefanCanzar

As #spatialtranscriptomics moves toward cell-level and multi-modal atlases, understanding algorithmic limits becomes increasingly important. Our evaluation framework supports transparent benchmarking and future method development. github.com/canzarlab/spat…

GitHub - canzarlab/spatial-domain-analysis-framework

Contribute to canzarlab/spatial-domain-analysis-framework development by creating an account on GitHub.

From github.com

Stefan Canzar @StefanCanzar · Mar 17

New preprint! We introduce an explanatory benchmark that asks when and why — not just which — spatial domain detection methods succeed or fail. #spatialtranscriptomics Preprint: biorxiv.org/content/10.648… Fantastic work by Alice Descoeudres, Tomislav Prusina, and all co-authors!

Columbia - Irving Institute for Cancer Dynamics @Cancer_dynamics · Mar 11

Envision the future of #SpatialTranscriptomics and #DigitalPathology tools in a new article spotlighting IICD Core Member @mssanjavickovic and her lab > bit.ly/40o5jOA #CancerResearch #BiomedicalEngineering #Multiomics #ColorectalCancer

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Hao Yin @HaoYin20 · Mar 10

SpatioTemporal Omics eneRgIES STORIES: learning Waddington differentiation potential (FGW loss) from #SpatialTranscriptomics (across time points) using Optimal Transport Tunable weights of spatial information Compute both pseudotime & velocity equivalents In Python Scverse vs PREStein distance Laura Cantini lab @naturemethods 2025 nature.com/articles/s4159…

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