Dr. Noble K Kurian ๐Ÿ‡ฎ๐Ÿ‡ณ
Dr. Noble K Kurian ๐Ÿ‡ฎ๐Ÿ‡ณ @DrNobleKKurian ยท
๐—ฆ๐—ง๐—”๐—ฅ๐—ง๐—œ๐—ก๐—š ๐—œ๐—ก ๐Ÿฎ ๐——๐—”๐—ฌ๐—ฆ.. ๐—ข๐—ก๐—Ÿ๐—ฌ ๐—Ÿ๐—œ๐— ๐—œ๐—ง๐—˜๐—— ๐—ฆ๐—˜๐—”๐—ง๐—ฆ ๐—Ÿ๐—˜๐—™๐—ง..๐—๐—ข๐—œ๐—ก ๐—ก๐—ข๐—ช.. ๐Ÿš€ ๐— ๐—ฎ๐˜€๐˜๐—ฒ๐—ฟ ๏ฟฝlnkd.in/gNqiwkJi๐—ก๐—”-๐˜€๐—ฒ๐—พ ๐——๐—ฎ๏ฟฝ๏ฟฝ๐—ฎ ๐—”๐—ป๐—ฎ๐—น๏ฟฝ๏ฟฝ๐˜€๐—ถ๐˜€ ๐Ÿ”— ๐—ฅ๐—ฒ๐—ด๏ฟฝs://t.co/7YeHC1a84g #Bioinformatics #SingleCell #RNASeq #Research https://t.co/RLqGV95EFM
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Finch
Finch @finch_shenq ยท
Used 6 RNA-seq libraries from different Litsea tissues: HISAT2 > StringTie > merged GTF > TransDecoder Found 4,194 novel genes not predicted by protein methods alone. RNA-seq is irreplaceable for species-specific gene discovery. #Bioinformatics #RNAseq
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ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ
ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ @chemi384 ยท
ใ€Nextflowใฏโ€œใงใ‹ใ„่งฃๆžๅ‘ใ‘โ€ใ ใ‘ใ˜ใ‚ƒใชใ„ใงใ™ใ€‘ 3ใ‚ตใƒณใƒ—ใƒซใฎRNA-seqใงใ‚‚ๅๅˆ†ไพกๅ€คใ‚ใ‚Šใ€‚ ใชใœใชใ‚‰ใ€ๆฌกใซ6ใ‚ตใƒณใƒ—ใƒซใ€12ใ‚ตใƒณใƒ—ใƒซใซใชใฃใŸๆ™‚ใซใใฎใพใพไผธใฐใ›ใ‚‹ใ‹ใ‚‰ใ€‚ ่‡ชๅˆ†ใ‚‚ๆœ€ๅˆใฏๅฐ่ฆๆจกใงๅฐŽๅ…ฅใ—ใ€ๅพŒใง20ๆคœไฝ“่ถ…ใงใ‚‚ใปใผๅŒใ˜ๆตใ‚Œใงๅ›žใ›ใพใ—ใŸใ€‚ #Nextflow #RNAseq #ใƒ‘ใ‚คใƒ—ใƒฉใ‚คใƒณ
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Finch
Finch @finch_shenq ยท
Homology misses species-specific genes. How to find them: 1. Align RNA-seq (multiple tissues) 2. StringTie assembly 3. Filter non-overlapping transcripts 4. TransDecoder for ORFs Found 4,194 novel genes. Don't leave them on the table. #Bioinformatics #RNAseq
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Covaris
Covaris @Covaris ยท
Attending #ABRF2026? ๐Ÿงฌ Visit Covaris at Booth #709 to meet Pola Olczak, Melissa Gabello, and Sujash Chatterjee and learn about our NEW truCOVERยฎ Total RNA Library Prep Kits. Not going to ABRF? Learn more here:hubs.la/Q046qLwY0q #RNASeq #Genomics #NGSs
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Dr. Noble K Kurian ๐Ÿ‡ฎ๐Ÿ‡ณ
Dr. Noble K Kurian ๐Ÿ‡ฎ๐Ÿ‡ณ @DrNobleKKurian ยท
๐Ÿš€ ๐— ๐—ฎ๐˜€๐˜๐—ฒ๐—ฟ ๐—ฆ๐—ถ๐—ป๐—ด๐—น๐—ฒ-๐—ฐ๐—ฒ๐—น๐—น ๐—ฅ๐—ก๐—”-๐˜€๐—ฒ๐—พ ๐——๐—ฎ๐˜๐—ฎ ๐—”๐—ป๐—ฎ๐—น๐˜†๐˜€๐—ถ๐˜€: ๐Ÿฐ-๐——๏ฟฝlnkd.in/gNqiwkJi๏ฟฝ๏ฟฝ๏ฟฝ๐—ธ๐˜€๐—ต๐—ผ๐—ฝ ๐Ÿ”— ๐—ฅ๐—ฒ๐—ด๐—ถ๐˜€๏ฟฝ๏ฟฝ๐—ฒ๐—ฟ ๐—ต๏ฟฝ๏ฟฝ๐—ฟ๐—ฒ https://t.co/7YeHC1a84g Cell #RNASeq #ResearchWorkshop #TIBRBiotech https://t.co/7oWjstlL8i
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ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ
ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ @chemi384 ยท
ใ€featureCountsใง่ฟทๅญใซใชใฃใŸ่ฉฑใ€‘ ใ‚ขใƒŽใƒ†ใƒผใ‚ทใƒงใƒณใฎๆŒ‡ๅฎšใƒŸใ‚นใงใ€้บไผๅญๆ•ฐใŒๅŠๅˆ†ใซใ€‚ ่‡ชๅˆ†ใ‚‚ๆœ€ๅˆใ‚„ใ‚‰ใ‹ใ—ใพใ—ใŸใ€‚ GTFใจๅ‚็…งใ‚ฒใƒŽใƒ ใฎใƒใƒผใ‚ธใƒงใƒณใ‚’ๆƒใˆใ‚‹ใ ใ‘ใง่งฃๆฑบใ€‚ ใ“ใ“ใ‚บใƒฌใ‚‹ใจๅ…จ้ƒจ็„กๆ„ๅ‘ณใซใชใ‚‹ใฎใงๆณจๆ„ใงใ™ใ€‚ #RNAseq #่งฃๆžๅˆๅฟƒ่€…
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Watchmaker Genomics
Watchmaker Genomics @WatchmakerGeno1 ยท
Automation at scale - no compromise to #RNAseq performance. At SLAS with @Agilent, we presented a poster on automating the Watchmaker mRNA Library Prep Kit on Bravo NGS. Result: manual-equivalent results, high reproducibility, no cross-contamination, 96 samples in ~7 hrs.
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Dr. Noble K Kurian ๐Ÿ‡ฎ๐Ÿ‡ณ
Dr. Noble K Kurian ๐Ÿ‡ฎ๐Ÿ‡ณ @DrNobleKKurian ยท
๐Ÿš€ ๐— ๐—ฎ๐˜€๐˜๐—ฒ๐—ฟ ๐—ฆ๐—ถ๐—ป๐—ด๐—น๐—ฒ-๐—ฐ๐—ฒ๐—น๐—น ๐—ฅ๐—ก๐—”-๐˜€๐—ฒ๐—พ ๐——๐—ฎ๐˜๐—ฎ ๐—”๐—ป๐—ฎ๐—น๐˜†๐˜€๐—ถ๐˜€: ๐Ÿฐ-๐——๏ฟฝlnkd.in/gNqiwkJi๏ฟฝ๏ฟฝ๏ฟฝ๐—ธ๐˜€๐—ต๐—ผ๐—ฝ ๐Ÿ”— ๐—ฅ๐—ฒ๐—ด๐—ถ๐˜€๏ฟฝ๏ฟฝ๐—ฒ๐—ฟ ๐—ต๏ฟฝ๏ฟฝ๐—ฟ๐—ฒ https://t.co/7YeHC1a84g Cell #RNASeq #ResearchWorkshop #TIBRBiotech https://t.co/jiHhE9Avuo
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ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ
ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ @chemi384 ยท
ใ€TPMใจFPKMใฎ้•ใ„ใ€่ชฌๆ˜Žใงใใพใ™ใ‹๏ผŸใ€‘ ใ“ใ“ๆ›–ๆ˜งใชใพใพใ ใจ่ซ–ๆ–‡ใง่ฉฐใฟใพใ™ใ€‚ TPMใฏใ‚ตใƒณใƒ—ใƒซ้–“ๆฏ”่ผƒๅ‘ใใ€ FPKMใฏๅŒไธ€ใ‚ตใƒณใƒ—ใƒซๅ†…ใ€‚ ไปŠใฏTPMไธ€ๆŠžใงOKใ€‚ ๅฎŸๅ‹™ใงใฏใ‚‚ใ†FPKMใฏไฝฟใ‚ใ‚Œใฆใ„ใพใ›ใ‚“ใ€‚ ๅฎš้‡ใฎๅ‰ๆใ‚’็†่งฃใ™ใ‚‹ใ ใ‘ใง่งฃๆžใฎ่ณชใŒไธŠใŒใ‚Šใพใ™ใ€‚ #ใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใƒžใƒ†ใ‚ฃใ‚ฏใ‚น #RNAseq
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ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ
ๅฑฑๅฃๆ˜Œ้›„๏ฝœใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใ‚’ใ‚ผใƒญใ‹ใ‚‰่งฃ่ชฌ๏ฝœใ‚ขใƒกใƒชใ‚จใƒ•ไปฃ่กจ @chemi384 ยท
ใ€RNA-seqใงโ€œใจใ‚Šใ‚ใˆใšDESeq2โ€ใ‚„ใฃใฆใพใ›ใ‚“ใ‹๏ผŸใ€‘ ๆœ€ๅˆใซQCใ‚’็”˜ใ่ฆ‹ใ‚‹ใจๅพŒใง็ขบๅฎŸใซ่ฉฐใฟใพใ™ใ€‚ ๅฎŸ้š›ใซ่‡ชๅˆ†ใ‚‚FastQCใ‚’ใ‚นใ‚ญใƒƒใƒ—ใ—ใฆใ€ ๅพŒใ‹ใ‚‰ใ‚ตใƒณใƒ—ใƒซ1/10ใŒไฝฟใˆใชใ„ใ“ใจใŒ็™บ่ฆšใ€‚ ๆœ€ไฝŽใงใ‚‚MultiQCใงๅ…จไฝ“็ขบ่ชโ†’ๅค–ใ‚Œๅ€คใƒใ‚งใƒƒใ‚ฏใฏๅฟ…้ ˆใ€‚ ใ“ใ‚Œใ ใ‘ใงๅ†่งฃๆžใ‚ณใ‚นใƒˆใŒๅŠๆธ›ใ—ใพใ™ใ€‚ #RNAseq #ใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใƒžใƒ†ใ‚ฃใ‚ฏใ‚น
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ใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใƒžใƒ†ใ‚ฃใ‚ฏใ‚นๅฎŸ่ทตใƒฉใƒœ
ใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉใƒžใƒ†ใ‚ฃใ‚ฏใ‚นๅฎŸ่ทตใƒฉใƒœ @BioinfoLab ยท
๏ผผ2025ๅนดๅนด้–“ๅ‹•็”ปใƒฉใƒณใ‚ญใƒณใ‚ฐ1ไฝ๏ผ๐Ÿ‘‘๏ผ NGSใƒ‡ใƒผใ‚ฟใซๅŸบใฅใใƒˆใƒฉใƒณใ‚นใ‚ฏใƒชใƒ—ใƒˆใƒผใƒ ่งฃๆžใซใŠใ„ใฆใ€็”Ÿ็‰ฉๅญฆ็š„ๆ„็พฉใ‚’ๅฐŽๅ‡บใ™ใ‚‹ใŸใ‚ใฎๆ ธๅฟƒ็š„ใƒ—ใƒญใ‚ปใ‚นใ‚’่ฉณ่ชฌใ€‚ ่งฃๆžใฎๆทฑๅŒ–ใซใ”ๆดป็”จใใ ใ•ใ„ใ€‚ #ใƒใ‚คใ‚ชใ‚คใƒณใƒ•ใ‚ฉ #ใƒˆใƒฉใƒณใ‚นใ‚ฏใƒชใƒ—ใƒˆใƒผใƒ  #RNAseq #NGS่งฃๆž #2025ๅนดไบบๆฐ—ๅ‹•็”ป amelieff.jp/online/cat_traโ€ฆ0 NGSใƒ‡ใƒผใ‚ฟใ‹ใ‚‰้บไผๅญ็™บ็พๆƒ…ๅ ฑใ‚’่ชญใฟ่งฃใใ€็”Ÿ็‰ฉๅญฆ็š„ๆ„ๅ‘ณใ‚’ๅฐŽๅ‡บใ™ใ‚‹ๆ‰‹ๆณ•ใ‚’่งฃ่ชฌใ—ใฆใ„ใพใ™ใ€‚็‰นใซใ€็™บ็พ้‡ใƒ‡ใƒผใ‚ฟใฎๆญฃ่ฆๅŒ–ใ‚„็ตฑ่จˆๅญฆ็š„ๆคœๅฎšใฎๅŸบ็คŽใซใคใ„ใฆใ€ๅฎŸ่ทต็š„ใชๆ‰‹้ †ใ‚’็ถฒ็พ…ใ€‚่งฃๆžใฎใƒ–ใƒฌใ‚คใ‚ฏใ‚นใƒซใƒผใ‚’่ฟฝๆฑ‚ใ™ใ‚‹็ ”็ฉถ่€…ใซใ”ๅ‚็…งใ„ใŸใ ใ‘ใพใ™ใ€‚ โ€ป2025ๅนด1ๆœˆใ€œ12ๆœˆใฎๅ‹•็”ป่ฆ–่ดๆ•ฐใซๅŸบใฅใใƒฉใƒณใ‚ญใƒณใ‚ฐ๏ผˆ่‡ช็คพ่ชฟใน๏ผ‰
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OmicsLogic
OmicsLogic @OmicsLogic ยท
Replying to @OmicsLogic
Interested in learning more? ๐Ÿ“ข Then join our ๐Ÿ“-๐–๐ž๐ž๐ค ๐ˆ๐ง๐ญ๐ž๐ง๐ฌ๐ข๐ฏ๐ž ๐Ž๐ง๐ฅ๐ข๐ง๐ž ๐“๐ซ๐š๐ข๐ง๐ข๐ง๐  ๐ข๐ง ๐๐ฅ๐š๐ง๐ญforms.gle/8RVZGYVi55DE7tโ€ฆ๐ฆ๐ข๐œ๐ฌ! ๐Ÿ”— ๐ซ๐ž๐ ๐ข๏ฟฝ๏ฟฝ๐ญ๐ž๐ซ ๏ฟฝ๏ฟฝ๐ž๐ซ๐ž: https://t.co/q0okNn5LKb #PlantTranscriptomics #RNASeq #PlantBiotechnology
Comprehensive 5-Week Online Program: NGS Plant RNA-Seq Data Analysis (Transcriptomics)

Plant transcriptomics has become a cornerstone of modern plant biology, enabling researchers to uncover gene expression dynamics underlying development, stress responses, and adaptation. However, the...

From docs.google.com
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